Author

Alfredo Ferro

University of CataniaORCID 0000-0002-9431-5788Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Bioinformatics· 2 Genomics· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Organism:human· 3 Approach:statistical model· 3 Assay:bulk RNA-seq· 2 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1 Research Focus:drug response / drug discovery· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Alfredo PulvirentiiD· 2 shared Gioacchino P. MarcecaiD· 2 shared Salvatore AlaimoiD· 2 shared Alessandro La FerlitaiD· 1 shared Alessandro LaganàiD· 1 shared Anna E. A. SuraceiD· 1 shared Bud MishraiD· 1 shared Carlo Maria CroceiD· 1 shared

Activity by Year

2020-2021 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 22 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersGenomics

Alfredo PulvirentiORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

GenomicsbioRxivPreprintDec 8, 2021

Harnessing gene-gene interactions via an RNA-Sequencing network analysis framework improves precision medicine prediction in rheumatoid arthritis

Elisabetta Sciacca, Anna E. A. Surace, Salvatore Alaimo…·Myles Lewis

This study uses gene-gene interaction networks from RNA-Seq data to improve prediction of treatment response in rheumatoid arthritis.

DOI 10.1101/2021.12.08.471133

humanbulk RNA-seq

𝕏 PostBluesky

BioinformaticsPLoS Computational BiologyPeer-reviewedJun 24, 2021

PHENSIM: Phenotype Simulator

Salvatore Alaimo, Rosaria Valentina Rapicavoli, Gioacchino P. Marceca…·Alfredo Ferro

PHENSIM simulates cell phenotype changes due to biomolecule activation/inhibition using signaling pathways, showing high prediction accuracy through benchmarking.

13 citations

𝕏 PostBluesky

BioinformaticsbioRxivPreprintSep 4, 2020

MiREDiBase: a manually curated database of validated and putative editing events in microRNAs

Gioacchino P. Marceca, Rosario Distefano, Luisa Tomasello…·Giovanni Nigita

MiREDiBase is a manually curated database of validated and putative miRNA editing events, including 3,059 sites from 626 pre-miRNAs in humans and three primates.

11 citations

humannon-human primate

𝕏 PostBluesky