Author

Haotong Sun

University of Chinese Academy of SciencesORCID 0000-0002-9929-6598Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Bioinformatics· 2

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:deep learning· 2 Organism:bacteria (other)· 1 Research Focus:benchmarking· 1 Research Focus:drug response / drug discovery· 1 Research Focus:gene regulatory network inference· 1 Approach:large language model· 1 Assay:metagenomics· 1 Research Focus:protein structure prediction· 1

Frequent Co-Authors

Peng YiniD· 2 shared Qiang KangiD· 2 shared Yong ZhangiD· 2 shared Bozhen HuiD· 1 shared Dongli Lu· 1 shared Feiran LiiD· 1 shared Haochen WangiD· 1 shared Qirong YangiD· 1 shared

Activity by Year

2025-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 39 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersBioinformatics

Peng YinORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

MicroGenomer: A Foundation Model for Transferable Microbial Genome Representations Enabling Multi-scale Genomic Understanding and Ecophysiological Trait Prediction

Qiang Kang, Yucheng Guo, Bozhen Hu, Xiaoping Li, Qirong Yang, Yujie Yang, Dongli Lu, Haotong Sun, Ruilai Xu, Ziyao Xu, Haochen Wang, Yuheng Lin, Yuxiang Li, Yong Zhang, Feiran Li, , Peng Yin

bioRxiv · Dec 29, 2025 · PreprintBioinformatics

Prediction of soil probiotics based on foundation model representation enhancement and stacked aggregation classifier

Qiang Kang, Haotong Sun, Yayu Wang, Xiaolong Fang, Yuxiang Li, Yong Zhang, Tong Wei, Peng Yin

The paper develops a method to predict soil probiotics using enhanced foundation model representations and a stacked aggregation classifier, achieving high accuracy and AUC on both balanced and imbalanced datasets.

Briefings in Bioinformatics · Aug 31, 2025Peer-reviewedBioinformatics