Author

Ziyao Xu

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 3

Signature Assays, Organisms & Methods

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Approach:deep learning· 3 Research Focus:drug response / drug discovery· 3 Research Focus:protein structure prediction· 2 Organism:bacteria (other)· 1 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Approach:diffusion model· 1 Assay:DNA methylation· 1

Frequent Co-Authors

Qirong YangiD· 3 shared Le CongiD· 2 shared Linlin Chao· 2 shared Mengdi WangiD· 2 shared Ruhong ZhouiD· 2 shared Ruofan JiniD· 2 shared Xiaoming ZhangiD· 2 shared Yucheng GuoiD· 2 shared

Activity by Year

2024-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 39 mutual co-author links

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3 shared papersBioinformatics

Qirong YangORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

MicroGenomer: A Foundation Model for Transferable Microbial Genome Representations Enabling Multi-scale Genomic Understanding and Ecophysiological Trait Prediction

Qiang Kang, Yucheng Guo, Bozhen Hu, Xiaoping Li, Qirong Yang, Yujie Yang, Dongli Lu, Haotong Sun, Ruilai Xu, Ziyao Xu, Haochen Wang, Yuheng Lin, Yuxiang Li, Yong Zhang, Feiran Li, , Peng Yin

bioRxiv · Dec 29, 2025 · PreprintBioinformatics

BioLab: End-to-End Autonomous Life Sciences Research with Multi-Agents System Integrating Biological Foundation Models

Ruofan Jin, Yucheng Guo, Yuanhao Qu, Ming Yang, Chun Shang, Qirong Yang, Linlin Chao, Yi Zhou, Rui Min Xu, Ziyao Xu, Ruhong Zhou, Zaixi Zhang, Mengdi Wang, Xiaoming Zhang, Le Cong

BioLab uses a multi-agent system with foundation models to autonomously design and validate antibodies, achieving superior performance compared to existing methods.

bioRxiv · Sep 3, 2025 · PreprintBioinformatics

RNAGenesis: A Generalist Foundation Model for Functional RNA Therapeutics

Zaixi Zhang, Ruofan Jin, Linlin Chao, Guangxue Xu, Yikun Zhang, Guowei Zhou, Di Yin, Yingqing Guo, Yaqi Fu, Yukang Yang, Kaixuan Huang, Xiaotong Wang, Junze Zhang, Yujie Yang, Qirong Yang, , Le Cong

RNAGenesis is a foundation model for RNA therapeutics that integrates sequence, structure, and function prediction, achieving state-of-the-art performance on multiple tasks and enabling functional RNA design.

bioRxiv · Dec 30, 2024 · PreprintBioinformatics