Tong Wei

This study identifies cellular and genetic changes in maize and teosinte ears, showing how cytokinin signaling and transcription factor expression differences drive cob thickening and increased kernel number during domestication.

OrionGeno annotates over 5,300 eukaryotic genomes using a phylogeny-aware deep learning model, outperforming existing methods in gene and protein structure prediction.

OneGenome-Rice (OGR) is a genomic foundation model for rice pre-trained on 422 genomes, outperforming existing models in 11 tasks and enabling downstream applications like trait analysis and gene expression prediction.

The paper develops a method to predict soil probiotics using enhanced foundation model representations and a stacked aggregation classifier, achieving high accuracy and AUC on both balanced and imbalanced datasets.

The paper uses single cell transcriptomes to study how regulatory networks change during the development of Kranz anatomy in C4 grasses.

The paper presents a telomere-to-telomere genome assembly for Oryza longistaminata, revealing structural variations and gene duplications that may contribute to its advantageous traits.

This study presents a chromosome-scale genome assembly of the rice variety Huizhan and identifies gene families and genes associated with disease resistance and heat tolerance.

The paper investigates the evolutionary dynamics of selenoproteins in Archaeplastida, finding losses in certain algal groups and potential gains via horizontal gene transfer.