Author

Jochem Nelen

University of OxfordORCID 0000-0002-9970-4950Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:benchmark study· 1 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Approach:deep learning· 1 Research Focus:drug response / drug discovery· 1 Approach:experimental assay· 1 Assay:protein structure· 1 Research Focus:protein structure prediction· 1

Frequent Co-Authors

Ali EbrahimiD· 1 shared Cédric ValléeiD· 1 shared Charlotte Mary DeaneiD· 1 shared E. Charles AdamsiD· 1 shared Ed GriffeniD· 1 shared Eda ÇapkıniD· 1 shared Elizabeth J. ShottoniD· 1 shared F. von DelftiD· 1 shared

Activity by Year

2026-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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1 shared paperBioinformatics

Ali EbrahimORCID

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1 paper

Recent·Most cited

The first OpenBind release: An open experimental structure-affinity dataset and benchmark for structure-based AI

Jochem Nelen, Omeir Khan, E. Charles Adams, Jasmin Cara Aschenbrenner, Warren Athol Thompson, Ali Ebrahim, Eda Çapkın, Cédric Vallée, OpenBind, Elizabeth J. Shotton, Ed Griffen, John D. Chodera, Charlotte Mary Deane, F. von Delft, Mohammed AlQuraishi, Fergus Imrie

A public crystallographic structure and affinity dataset for enteroviral 2A protease (925 binding events, 699 compounds), with docking, cofolding and screening baselines. Fragment fine-tuning of OpenFold3-p2 improves follow-on predictions.

bioRxiv · Sep 1, 2026 · PreprintBioinformatics✦ In-depth digest