Author

David N. Nicholson

University of PennsylvaniaORCID 0000-0003-0002-5761Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 3

Signature Assays, Organisms & Methods

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Research Focus:database / resource· 3 Approach:statistical model· 3 Research Focus:benchmarking· 1

Frequent Co-Authors

Casey S. GreeneiD· 3 shared Daniel HimmelsteiniD· 2 shared Vincent RubinettiiD· 2 shared Benjamin J. HeiliD· 1 shared Blair D. SullivaniD· 1 shared Dongbo HuiD· 1 shared Dongbo Hu· 1 shared Faisal AlquaddoomiiD· 1 shared

Activity by Year

2021-2022 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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3 shared papersBioinformatics

Casey S. GreeneORCID

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3 papers

Recent·Most cited

BioinformaticsGigaSciencePeer-reviewedDec 28, 2022

Hetnet connectivity search provides rapid insights into how two biomedical entities are related

Daniel Himmelstein, Michael Zietz, Vincent Rubinetti…·Casey S. Greene

The paper introduces hetnet connectivity search to find meaningful relationships between biomedical entities in heterogeneous networks without requiring supervised training data.

11 citations

statistical modeldatabase / resource

𝕏 PostBluesky

BioinformaticsBioData MiningPeer-reviewedOct 18, 2022

Expanding a Database-derived Biomedical Knowledge Graph via Multi-relation Extraction from Biomedical Abstracts

David N. Nicholson, Daniel Himmelstein, Casey S. Greene

The paper improves knowledge graph expansion by reusing label functions for multiple edge types in biomedical abstracts.

12 citations

statistical modeldatabase / resource

𝕏 PostBluesky

BioinformaticsbioRxivPreprintMar 4, 2021

Linguistic Analysis of the bioRxiv Preprint Landscape

David N. Nicholson, Vincent Rubinetti, Dongbo Hu…·Casey S. Greene

The paper analyzes linguistic features of bioRxiv preprints compared to published biomedical texts and develops tools to link preprints to peer-reviewed articles and journals.

7 citations

statistical modelbenchmarking

𝕏 PostBluesky