Author
University of PennsylvaniaORCID 0000-0002-2811-1031Unclaimed ORCID profile · follow to get notified of new preprints
4 papers
Recent·Most cited
Shuo Zhang, Benjamin J. Heil, Weiguang Mao, Maria D. Chikina, Casey S. Greene, Elizabeth A. Heller
The paper introduces mousiPLIER, a mouse pathway-level information extractor model trained on brain RNA-seq data, which reduces dimensionality and identifies aging-related latent variables.
eNeuro · May 24, 2024Peer-reviewedBioinformatics
Daniel Himmelstein, Michael Zietz, Vincent Rubinetti, Kyle Kloster, Benjamin J. Heil, Faisal Alquaddoomi, Dongbo Hu, David N. Nicholson, Yun Hao, Blair D. Sullivan, Michael W. Nagle, Casey S. Greene
The paper introduces hetnet connectivity search to find meaningful relationships between biomedical entities in heterogeneous networks without requiring supervised training data.
GigaScience · Dec 28, 2022Peer-reviewedBioinformatics
Benjamin J. Heil, Jake Crawford, Casey S. Greene
This study compares neural networks and logistic regression for transcriptomic prediction, finding both linear and non-linear signals are present but not always sufficient for neural networks to outperform linear models.
bioRxiv · Jun 22, 2022 · PreprintBioinformatics
S. M. Ashiqul Islam, Benjamin J. Heil, Christopher Michel Kearney, Erich J. Baker
This study introduces a modified N-Gram and Skip-Gram model for protein classification from primary sequence data, showing improved accuracy over existing methods.
Bioinformatics · Dec 21, 2017Peer-reviewedBioinformatics