Abhishek Halder

The paper introduces kGain, a metric quantifying k-mer frequency shifts due to mutations, and shows it predicts adaptive potential across species and experimental systems.

scKNIFE integrates gene expression with functional annotations to identify tumor programs and treatment-related functional variation in breast cancer.

The paper introduces BioChirp, a system for reliable retrieval of structured biomedical data, outperforming existing agentic NL2SQL systems in accuracy and consistency.

This paper introduces FORGE, a framework that jointly models drug response and gene essentiality to identify treatment groups and predict efficacy using basal gene expression.

The paper introduces a Python package for DNA sequence encoding using Frequency Chaos Game Representation (FCGR), showing improved accuracy and efficiency over an R-based library for DNA sequences.