Linda Dekker

This paper develops a pipeline to generate functional E. coli plasmids using a DNA language model, resulting in three validated synthetic plasmids.

This paper designs bacterial computers using spatial diffusion and engineered Escherichia coli to perform digital logic operations and complex computations.

The paper develops a modular platform for expressing and secreting bacteriocins from non-pathogenic E. coli to target pathogenic bacteria, demonstrating antimicrobial activity and modeling strain interactions.

The paper introduces a modular cloning system for genetic engineering in Komagataeibacter bacteria to enable multigene construct assembly and programmed protein secretion.

The paper constructs acetoacetate-sensitive whole-cell biosensors using the AtoSC two-component system and demonstrates their functionality in E. coli.

The paper identifies strong transcriptional terminators in Synechocystis sp. PCC 6803 that improve inducible control of chromosomally integrated genetic constructs.