Author

Umair W. Khan

University of Wisconsin–MadisonORCID 0000-0003-0206-0667Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Developmental Biology· 3

Signature Assays, Organisms & Methods

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Organism:plant (other)· 3 Assay:bulk RNA-seq· 2 Research Focus:cell type annotation· 2 Approach:experimental assay· 2 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Approach:statistical model· 1

Frequent Co-Authors

Phillip A. NewmarkiD· 3 shared Akshada B. Redkar· 1 shared David J. ForsthoefeliD· 1 shared Melanie IssigonisiD· 1 shared Nicholas I. CejdaiD· 1 shared Peter W. ReddieniD· 1 shared Rosa Mejia-Sanchez· 1 shared Sylvain W. Lapan· 1 shared

Activity by Year

2020-2022 · peak 2/yr

Co-Author Collaboration Network

9 top collaborators · 24 mutual co-author links

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3 shared papersDevelopmental Biology

Phillip A. NewmarkORCID

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3 papers

Recent·Most cited

Developmental BiologyPLoS BiologyPeer-reviewedJul 15, 2022

Krüppel-like factor 4 is required for development and regeneration of germline and yolk cells from somatic stem cells in planarians

Melanie Issigonis, Akshada B. Redkar, Tania Rozario…·Phillip A. Newmark

This study shows that Klf4 is essential for germline and yolk cell development and regeneration from somatic stem cells in planarians.

23 citations

plant (other)experimental assay

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Developmental BiologyCell ReportsPeer-reviewedMar 1, 2022

Somatic regulation of female germ cell regeneration and development in planarians

Umair W. Khan, Phillip A. Newmark

The paper identifies genes and factors involved in female germ cell development and regeneration in planarians, revealing shared molecular signatures with pluripotent stem cells and distinct somatic roles.

21 citations

plant (other)bulk RNA-seq

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Developmental BiologyeLifePeer-reviewedApr 2, 2020

Cell-type diversity and regionalized gene expression in the planarian intestine revealed by laser-capture microdissection transcriptome profiling

David J. Forsthoefel, Nicholas I. Cejda, Umair W. Khan, Phillip A. Newmark

This study uses laser-capture microdissection and RNA-Seq to analyze the planarian intestine's transcriptome, revealing cell-type diversity and regionalized gene expression.

54 citations

plant (other)bulk RNA-seq

𝕏 PostBluesky