John H. Morris

microbetag enhances microbial network interpretation by annotating nodes with phenotypic traits and edges with metabolic complementarities, using a database of annotated genomes.

U-CIE encodes high-dimensional data as colors using UMAP and CIELAB to preserve structure for visualization.

This study benchmarks four methods for assigning cell type labels to cell clusters in scRNA-seq data, showing high performance but variability in precision-recall across methods and datasets.

stringApp, a Cytoscape app, imports STRING and STITCH networks with disease, tissue, localization and drug-target annotations, enabling GUI-based enrichment, clustering and visualization of proteomics data.