Jan Gorodkin

The paper presents a cross-species single-cell atlas of the entorhinal cortex across mammals, identifying conserved and species-specific cellular innovations related to spatial navigation.

The paper identifies a conserved long non-coding RNA in Leishmania braziliensis and shows its structural importance for parasite fitness and RNA-protein interactions.

The paper identifies Golgi fragmentation as an early AD phenotype in neurons using stem cell and mouse models, showing its link to SORL1 variants and glycosylation changes.

The paper identifies an RNA regulon involving the 3UTR of FurinA and Ybx1 that regulates translational repression, essential for heart morphogenesis and valve function in zebrafish.

This study characterizes the development of the entorhinal cortex in pigs and mice, revealing a parallel lamination pattern during neurogenesis that differs from neocortical lamination.

The paper uses single-cell RNA sequencing to study porcine medial entorhinal cortex development and demonstrates the production of human entorhinal stellate cell-like cells from pluripotent stem cells.

The paper introduces BSGatlas, an enhanced genome annotation resource for Bacillus subtilis that integrates multiple sources to improve ncRNA and transcript annotations.

The paper identifies 51 differentially regulated genes in UC colon and blood by comparing a DSS-UC mouse model with human UC data, suggesting biomarkers and therapeutic targets.

stringApp, a Cytoscape app, imports STRING and STITCH networks with disease, tissue, localization and drug-target annotations, enabling GUI-based enrichment, clustering and visualization of proteomics data.