Sandeep Chakraborty

This paper presents a chromosome-scale walnut genome assembly, improving gene prediction and enabling better analysis of genetic diversity and proteomic changes.

The paper uses Oxford Nanopore sequencing to detect CRISPR-Cas9 off-target edits in mitochondrial and nuclear genomes, finding potential off-target activity in the mitochondrial genome.

The paper identifies a CRISPR-Cas1 locus in E. faecalis V583 using RNA-seq data and challenges the hypothesis that CRISPR absence correlates with antibiotic resistance acquisition.

The paper reports a novel CRISPR-Cas locus in Symbiobacterium thermophilum with features suggesting a potential Cas9-like protein and unique associated proteins.

The paper refutes claims of MET gene over-expression in tumor-educated platelets by showing the analysis used non-specific intronic sequences, not specific exonic ones.

This paper critiques the TEP-study's analysis of EGFR mutations in NSCLC samples, highlighting issues with gene expression data and statistical methods.

The paper analyzes the walnut chloroplast genome using an ORF-based method, identifying new genes and correcting misannotations of the rps12 gene in other organisms.