Author

David B Neale

University of California, Davis

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 3 Plant Biology· 1

Signature Assays, Organisms & Methods

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Assay:whole-genome sequencing· 4 Approach:experimental assay· 2 Research Focus:genome assembly· 2 Organism:plant (other)· 2 Approach:statistical model· 2 Research Focus:database / resource· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Aleksey V. ZiminiD· 2 shared Amanda R. De La TorreiD· 2 shared Brian J Allen· 2 shared Daniela PuiuiD· 2 shared Luca BiancoiD· 2 shared Michela TroggioiD· 2 shared Steven L. SalzbergiD· 2 shared Winston TimpiD· 2 shared

Activity by Year

2019-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 39 mutual co-author links

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2 shared papersGenomics

Aleksey V. ZiminORCID

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Author profile →

4 papers

Recent·Most cited

A genome sequence for the threatened whitebark pine

David B Neale, Aleksey V. Zimin, Amy Meltzer, Akriti Bhattarai, Maurice Amee, Laura Figueroa‐Corona, Brian J Allen, Daniela Puiu, Jessica W. Wright, Amanda R. De La Torre, Patrick E. McGuire, Winston Timp, Steven L. Salzberg, Jill Wegrzyn

The paper produces a high-quality genome sequence for whitebark pine and identifies NLR genes associated with resistance to white pine blister rust.

G3 Genes Genomes Genetics · Mar 25, 2024Peer-reviewedGenomics

High-quality chromosome-scale assembly of the walnut (Juglans regia L) reference genome

Annarita Marrano, Monica Britton, Paulo A. Zaini, Aleksey V. Zimin, Rachael Workman, Daniela Puiu, Luca Bianco, Erica A. Di Pierro, Brian J Allen, Sandeep Chakraborty, Michela Troggio, Charles A. Leslie, Winston Timp, Abhaya M. Dandekar, Steven L. Salzberg, David B Neale

This paper presents a chromosome-scale walnut genome assembly, improving gene prediction and enabling better analysis of genetic diversity and proteomic changes.

GigaScience · May 1, 2020Peer-reviewedGenomics

Pseudo-chromosome length genome assembly of a double haploid ‘Bartlett’ pear (Pyrus communis L.)

Gareth Linsmith, Stéphane Rombauts, Sara Montanari, Cecilia Hong Deng, Jean‐Marc Celton, Philippe Guérif, Chang Liu, Rolf Lohaus, Jason D. Zurn, Alessandro Cestaro, Nahla Victor Bassil, Linda V. Bakker, Elio G. W. M. Schijlen, Susan E. Gardiner, Yves Lespinasse, , Luca Bianco

The paper presents an improved genome assembly of the European pear using long-read sequencing and other techniques, resulting in a more accurate gene count.

GigaScience · Dec 1, 2019Peer-reviewedPlant Biology

Climate adaptation shaped by subtle to moderate allele frequency shifts in loblolly pine

Amanda R. De La Torre, Benjamin Wilhite, David B Neale

The paper identifies 492 SNPs associated with climate variables in loblolly pine, showing adaptation is driven by allele frequency shifts with moderate to small effects.

Genome Biology and Evolution · Oct 1, 2019Peer-reviewedGenomics