Paula Ruiz-Rodríguez

This study shows that host-strain compatibility in Mycobacterium tuberculosis infections leads to distinct transcriptional responses, with compatible combinations showing higher infection rates and shared pathways related to host proliferation.

Pathotypr is a tool for MTBC lineage assignment and resistance variant detection, achieving high accuracy and speed for genomic surveillance.

This study examines deletion repair in the BA.1 SARS-CoV-2 spike protein, finding that such events are rare and have limited direct impact on viral evolution but may influence fitness-enhancing mutations.

VIPERA analyzes intra-patient SARS-CoV-2 sequence evolution to track viral ancestry and trajectories.

This study presents the genome of M. brumae and shows its nonpathogenic and immunogenic traits through genomic analysis.

The paper investigates the structural and functional impact of the S:A222V mutation in SARS-CoV-2, showing increased RBD opening and ACE2 binding without reducing neutralization capacity.

The paper analyzes genomes of Mycobacterium africanum strains to identify a new lineage and explore their evolutionary history and phylogeography.