Mireia Coscollá

This study shows that host-strain compatibility in Mycobacterium tuberculosis infections leads to distinct transcriptional responses, with compatible combinations showing higher infection rates and shared pathways related to host proliferation.

Pathotypr is a tool for MTBC lineage assignment and resistance variant detection, achieving high accuracy and speed for genomic surveillance.

VIPERA analyzes intra-patient SARS-CoV-2 sequence evolution to track viral ancestry and trajectories.

This study presents the genome of M. brumae and shows its nonpathogenic and immunogenic traits through genomic analysis.

The paper investigates the structural and functional impact of the S:A222V mutation in SARS-CoV-2, showing increased RBD opening and ACE2 binding without reducing neutralization capacity.

The paper identifies high within-lineage genomic diversity and gene content differences in Mycobacterium tuberculosis complex lineage 5 compared to H37Rv, affecting transmission analysis and suggesting the need for alternative reference genomes.

The paper analyzes genomes of Mycobacterium africanum strains to identify a new lineage and explore their evolutionary history and phylogeography.

The paper analyzes whole genome sequences of Mycobacterium tuberculosis lineages L1 and L3 to show South Asia's role in their dispersion and identify local adaptation at the esxH locus.

The paper compares the genomes of Mycobacterium africanum Lineage 5 and 6 from Ghana, finding genomic diversity and selection pressure differences suggesting distinct ecological niches.

Treemmer reduces large phylogenetic datasets by removing redundant leaves, preserving diversity while simplifying the dataset.