Author

John B. Ridenour

Oklahoma Medical Research FoundationORCID 0000-0003-0852-2981Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Molecular Biology· 2 Genetics· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Research Focus:gene regulatory network inference· 2 Assay:DNA methylation· 1 Organism:fungi (other)· 1 Approach:statistical model· 1 Organism:yeast· 1

Frequent Co-Authors

Rafał DonczewiD· 2 shared Agnieszka Machowska· 1 shared Devin F WrightiD· 1 shared Iwona Pasionek· 1 shared Kevin A Boyd· 1 shared Magdalena DonczewiD· 1 shared Mareike MölleriD· 1 shared Michael FreitagiD· 1 shared

Activity by Year

2022-2026 · peak 1/yr

Co-Author Collaboration Network

9 top collaborators · 18 mutual co-author links

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2 shared papersMolecular Biology

Rafał DonczewORCID

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3 papers

Recent·Most cited

Molecular BiologyNucleic Acids ResearchPeer-reviewedJul 3, 2026

The extra-terminal domain drives the role of BET proteins in transcription

Iwona Pasionek, John B. Ridenour, Agnieszka Machowska…·Rafał Donczew

This study identifies the extra-terminal domain as essential for BET protein function in transcription and chromatin occupancy.

1 citation

statistical modelgene regulatory network inference

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Molecular BiologyBMC MethodsPeer-reviewedJul 11, 2024

An end-to-end workflow to study newly synthesized mRNA following rapid protein depletion in Saccharomyces cerevisiae

John B. Ridenour, Rafał Donczew

The paper describes an end-to-end workflow combining AID system and SLAM-seq to study direct effects of transcriptional regulators in S. cerevisiae using BET proteins as a test case.

2 citations

yeastexperimental assay

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GeneticsbioRxivPreprintNov 25, 2022

H4K20me3 controls Ash1-mediated H3K36me3 and transcriptional silencing in facultative heterochromatin

Mareike Möller, John B. Ridenour, Devin F Wright, Michael Freitag

This study shows that H4K20me3 is essential for transcriptional silencing in facultative heterochromatin by maintaining Ash1-mediated H3K36me3 and affecting other chromatin marks in the fungus Zymoseptoria tritici.

2 citations

fungi (other)DNA methylation

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