Nicola Soranzo

The paper introduces the Microbiology Galaxy Lab, a community-driven platform for reproducible and FAIR microbial data analysis, offering tools for various omics data types and use cases.

EISCA and EISTA are pipelines for single-cell and spatial transcriptomics analysis that provide standardized, modular workflows for data processing and downstream analysis.

Planemo is a command-line toolkit for developing, deploying, and executing Galaxy tools and workflows, promoting best practices in scientific data analysis.

The paper introduces Galaxy Training Network (GTN) as a framework for creating and sharing FAIR training materials for data analysis, with recent improvements to support educators and expand its use in various learning environments.

LotuS2 is a fast and accurate tool for amplicon sequencing analysis that outperforms existing pipelines in speed and diversity metrics.

The paper describes integrating refgenie into Galaxy to manage and share reference datasets, with tools for retrieval and a global repository for easy access.

The paper introduces a Galaxy-based suite for scRNA-seq analysis, offering workflows, training resources, and tools for preprocessing, normalization, and clustering across 10x and alternative platforms.

The paper develops Galaxy-based tools for scRNA-seq quality control and analysis, making the process more accessible through simple scripts and a user-friendly interface.

Aequatus provides an in-depth visualization of gene structure across gene families, with options to render and filter visualizations, and is available as an open-source tool.

Bioconda provides a sustainable, comprehensive distribution of bioinformatics software using Conda for reproducible analysis across platforms.

The paper presents technologies that make computational reproducibility practical by integrating package management, containerization, and workflow systems.

The paper presents a community-driven framework for interactive data analytics training in life sciences, enabling researchers to learn through web-based computation without software installation.

GeneSeqToFamily converts the Ensembl Compara GeneTrees pipeline into a Galaxy workflow for gene family analysis and visualization.

The paper integrates NCBI BLAST+ into Galaxy to enable sequence comparison workflows, making both simple and advanced BLAST tasks accessible.