Author

John Robert Ferdinand

University of CambridgeORCID 0000-0003-0936-0128Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:human· 3 Approach:statistical model· 3 Research Focus:cell type annotation· 2 Research Focus:differential expression· 2 Assay:scRNA-seq· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:database / resource· 1

Frequent Co-Authors

Menna Ruth ClatworthyiD· 3 shared Kerstin B. MeyeriD· 2 shared Kevin W. LoudoniD· 2 shared Sarah Amalia TeichmanniD· 2 shared A. Tsingene· 1 shared Andrew R. J. LawsoniD· 1 shared Anna Wilbrey-ClarkiD· 1 shared Anne Yvonne WarreniD· 1 shared

Activity by Year

2019-2021 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 31 mutual co-author links

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3 shared papersGenomics

Menna Ruth ClatworthyORCID

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3 papers

Recent·Most cited

GenomicsbioRxivPreprintNov 12, 2021

Multi-regional characterisation of renal cell carcinoma and microenvironment at single cell resolution

Ruoyan Li, John Robert Ferdinand, Kevin W. Loudon…·Thomas J. Mitchell

A multi-regional single-cell study of kidney tumours reveals clonotypic heterogeneity, immune cell exhaustion, and potential therapeutic targets through transcriptomic and exomic analysis.

3 citations

humanscRNA-seq

𝕏 PostBluesky

GenomicsbioRxivPreprintAug 31, 2019

Lung, spleen and oesophagus tissue remains stable for scRNAseq in cold preservation

Elo Madissoon, Anna Wilbrey-Clark, Ricardo J. Miragaia…·Kerstin B. Meyer

This study evaluates the impact of cold storage on scRNAseq data quality for lung, spleen, and oesophagus tissues, finding minimal effects within 24 hours but increased stress markers at 72 hours.

8 citations

humanscRNA-seq

𝕏 PostBluesky

PhysiologybioRxivPreprintJan 16, 2019

Investigation of the transcriptional profile of human kidneys during machine perfusion reveals potential benefits of haemoadsorption

John R. Ferdinand, Sarah A. Hosgood, Tom Moore…·Menna R. Clatworthy

The study compares cold storage and normothermic machine perfusion (NMP) on kidney transcriptomes, showing haemoadsorption reduces inflammation and enhances energy metabolism.

DOI 10.1101/521294

humanbulk RNA-seq

𝕏 PostBluesky