Author

Kota Ishibashi

Kyoto Sangyo UniversityORCID 0000-0003-0956-4075Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Research Focus:differential expression· 2 Organism:zebrafish· 2 Approach:experimental assay· 1 Approach:statistical model· 1

Frequent Co-Authors

Peixun HaniD· 2 shared Seisuke KimuraiD· 2 shared Shintaro IwasakiiD· 2 shared Yuichiro MishimaiD· 2 shared Kimi Wakabayashi· 1 shared Toshifumi InadaiD· 1 shared Yuichi ShichinoiD· 1 shared

Activity by Year

2022-2023 · peak 1/yr

Co-Author Collaboration Network

7 top collaborators · 21 mutual co-author links

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2 shared papersMolecular Biology

Peixun HanORCID

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2 papers

Recent·Most cited

Molecular BiologybioRxivPreprintJul 10, 2023

Translation of zinc finger domains induces ribosome collision and Znf598-dependent mRNA decay in vertebrates

Kota Ishibashi, Yuichi Shichino, Peixun Han…·Yuichiro Mishima

The paper investigates how Znf598-mediated no-go decay (NGD) degrades mRNAs encoding C2H2-ZF domains during zebrafish development, preventing ribosome collisions and maintaining translational homeostasis.

DOI 10.1101/2023.07.10.548350

zebrafishbulk RNA-seq

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Molecular BiologyThe EMBO JournalPeer-reviewedJan 18, 2022

Transient ribosome slowdown at the decoding step triggers mRNA degradation independent of Znf598 in zebrafish

Yuichiro Mishima, Peixun Han, Kota Ishibashi…·Shintaro Iwasaki

The paper identifies codon-mediated mRNA decay in zebrafish embryos, showing ribosome decoding kinetics affect mRNA stability independently of Znf598 and stall-dependent decay.

36 citations

zebrafishbulk RNA-seq

𝕏 PostBluesky