signifinder enables the identification of tumor cell states and cancer expression signatures in bulk, single-cell and spatial transcriptomic data
Stefania Pirrotta, Laura Masatti, Anna Corrà, Fabiola Pedrini, Giovanni Esposito, Paolo G. V. Martini, Davide Risso, Chiara Romualdi, Enrica Calura
signifinder is an R package that collects, implements, and compares cancer-related gene expression signatures across bulk, single-cell, and spatial transcriptomic data to improve reproducibility and usability.
bioRxiv · Mar 7, 2023 · PreprintBioinformatics