Author

Stefania Pirrotta

University of PaduaORCID 0009-0004-0030-217XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Research Focus:gene regulatory network inference· 2 Assay:scRNA-seq· 2 Assay:spatial transcriptomics· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:database / resource· 1

Frequent Co-Authors

Enrica CaluraiD· 2 shared Anna CorràiD· 1 shared Chiara RomualdiiD· 1 shared Davide RissoiD· 1 shared Fabiola PedriniiD· 1 shared Giovanni EspositoiD· 1 shared Laura MasattiiD· 1 shared Massimo BonoraiD· 1 shared

Activity by Year

2023-2024 · peak 1/yr

Co-Author Collaboration Network

9 top collaborators · 29 mutual co-author links

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2 shared papersBioinformatics

Enrica CaluraORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintNov 27, 2024

Dissect mitochondrial activity by transcriptome data with mitology R package

Stefania Pirrotta, Massimo Bonora, Enrica Calura

The paper introduces the mitology R package to specifically analyze mitochondrial activity using transcriptomic data, including single-cell and spatial transcriptomics.

1 citation

bulk RNA-seqscRNA-seq

𝕏 PostBluesky

BioinformaticsbioRxivPreprintMar 7, 2023

signifinder enables the identification of tumor cell states and cancer expression signatures in bulk, single-cell and spatial transcriptomic data

Stefania Pirrotta, Laura Masatti, Anna Corrà…·Enrica Calura

signifinder is an R package that collects, implements, and compares cancer-related gene expression signatures across bulk, single-cell, and spatial transcriptomic data to improve reproducibility and usability.

4 citations

humanbulk RNA-seq

𝕏 PostBluesky