Author

Trisevgeni Rapakoulia

Max Planck Institute for Molecular GeneticsORCID 0000-0003-1064-3571Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Bioinformatics· 3

Signature Assays, Organisms & Methods

Click to filter · or open tag

Assay:bulk RNA-seq· 2 Research Focus:gene regulatory network inference· 2 Organism:human· 2 Assay:ChIP-seq· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1 Research Focus:drug response / drug discovery· 1

Frequent Co-Authors

Xin GaoiD· 2 shared Akira HasegawaiD· 1 shared Antonella IulianoiD· 1 shared Davide CacchiarelliiD· 1 shared Diego di BernardoiD· 1 shared Diego L. Medina· 1 shared Erik ArneriD· 1 shared Francesco NapolitanoiD· 1 shared

Activity by Year

2021-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersBioinformatics

Xin GaoORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

BioinformaticsBioinformaticsPeer-reviewedNov 1, 2023

CENTRE: A gradient boosting algorithm for Cell-type-specific ENhancer-Target pREdiction

Trisevgeni Rapakoulia, Sara Lopez Ruiz De Vargas, Persia Akbari Omgba…·Martin Vingron

CENTRE predicts cell-type-specific enhancer-target interactions using gene expression and ChIP-seq data, outperforming methods requiring extensive experimental data.

6 citations

ChIP-seqbulk RNA-seq

𝕏 PostBluesky

BioinformaticsBioinformaticsPeer-reviewedApr 12, 2022

Deep learning identifies and quantifies recombination hotspot determinants

Yu Li, Siyuan Chen, Trisevgeni Rapakoulia…·Xin Gao

This paper introduces RHSNet, a deep learning method that identifies and quantifies recombination hotspot determinants across species, sexes, and populations.

17 citations

humanmouse

𝕏 PostBluesky

BioinformaticsStem Cell ReportsPeer-reviewedApr 22, 2021

Automatic identification of small molecules that promote cell conversion and reprogramming

Francesco Napolitano, Trisevgeni Rapakoulia, Patrizia Annunziata…·Erik Arner

DECCODE identifies small molecules that enhance cell reprogramming and conversion using transcriptional data and drug profiles.

30 citations

humanbulk RNA-seq

𝕏 PostBluesky