Author

Berndt Müller

University of AberdeenORCID 0000-0003-1279-5421Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genomics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Approach:experimental assay· 2 Research Focus:gene regulatory network inference· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Organism:C. elegans· 1 Research Focus:database / resource· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Jonathan PettittiD· 3 shared Marius A. WenzeliD· 3 shared Bernadette ConnollyiD· 1 shared Christopher JohnstoniD· 1 shared David MacLeod· 1 shared Eileen ClemensiD· 1 shared Irmgard U. HaussmanniD· 1 shared Maheshika Kurukulasuriya· 1 shared

Activity by Year

2020-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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3 shared papersMolecular Biology

Jonathan PettittORCID

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3 papers

Recent·Most cited

Molecular BiologyNucleic Acids ResearchPeer-reviewedApr 8, 2026

Cap-adjacent 2'-O-ribose methylation of RNA in C. elegans is required for postembryonic growth and germline development in the presence of the decapping exonuclease EOL-1

Eileen Clemens, Sarah Brivio, Mohammed Al-Khafaji…·Jonathan Pettitt

The paper investigates the role of cap-adjacent 2'-O-ribose methylation (cOMe) in C. elegans, showing it protects transcripts from decapping exonuclease EOL-1 and is essential for growth and germline development.

2 citations

C. elegansexperimental assay

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BioinformaticsBMC BioinformaticsPeer-reviewedMar 22, 2021

SLIDR and SLOPPR: Flexible identification of spliced leader trans-splicing and prediction of eukaryotic operons from RNA-Seq data

Marius A. Wenzel, Berndt Müller, Jonathan Pettitt

SLIDR and SLOPPR are pipelines for identifying spliced leader trans-splicing and predicting operons from RNA-Seq data, showing accurate detection of known and novel elements.

10 citations

bulk RNA-seqstatistical model

𝕏 PostBluesky

GenomicsRNAPeer-reviewedSep 4, 2020

Deep evolutionary origin of nematode SL2 trans-splicing revealed by genome-wide analysis of the Trichinella spiralis transcriptome

Marius A. Wenzel, Christopher Johnston, Berndt Müller…·Bernadette Connolly

The paper identifies SL2-type spliced leaders in Trichinella spiralis, showing they are conserved across nematodes and evolved earlier than previously thought.

3 citations

bulk RNA-seqstatistical model

𝕏 PostBluesky