Sharon M. Crook

The paper describes the NeuroML ecosystem, a standardized framework for multi-scale neuroscience modeling that promotes interoperability and FAIR principles in research workflows.

The paper introduces NeuroML-DB, a database of computational neuroscience models, enabling reuse and analysis of models through standardized NeuroML format and integration with other resources.

Open Source Brain provides a platform for visualizing, simulating, and collaboratively developing standardized neuronal and circuit models to improve model transparency and reproducibility.

NeuronUnit provides a framework for validating neuron models using data from neurophysiologists and neuroanatomists, integrating with existing neuroinformatics resources.

This paper introduces SNaReSim, a new nanopore read simulator that better captures k-mer error distributions compared to existing tools.