Padraig Gleeson

The paper introduces the C. elegans Connectome Toolbox, a framework for integrating and analyzing multimodal connectomic data, enabling comparison across datasets and modalities.

The paper describes the NeuroML ecosystem, a standardized framework for multi-scale neuroscience modeling that promotes interoperability and FAIR principles in research workflows.

The paper introduces NeuroML-DB, a database of computational neuroscience models, enabling reuse and analysis of models through standardized NeuroML format and integration with other resources.

The paper introduces the SONATA data format to efficiently describe large-scale network models in neuroscience, enabling model construction, simulation, and sharing.

Open Source Brain provides a platform for visualizing, simulating, and collaboratively developing standardized neuronal and circuit models to improve model transparency and reproducibility.

NetPyNE is a tool for creating multiscale neuronal network models in NEURON using declarative specifications, enabling efficient simulation and analysis of brain circuits.

The paper discusses the importance of sharing computational code in neuroscience and highlights challenges in current practices.