Author

Raeece Naeem

King Abdullah University of Science and TechnologyORCID 0000-0003-1734-1007Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genomics· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Organism:virus· 2 Assay:whole-genome sequencing· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:clustering· 1 Research Focus:database / resource· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Arnab PainiD· 2 shared Qingtian GuaniD· 2 shared A. Pain· 1 shared Abbas Saleh Al MutairiD· 1 shared Abdallah M. Abdallah· 1 shared Awad Al‐OmariiD· 1 shared E.M. Weerdenburg· 1 shared Huoming Zhang· 1 shared

Activity by Year

2018-2020 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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2 shared papersBioinformatics

Arnab PainORCID

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Author profile →

3 papers

Recent·Most cited

assayM: a web application to monitor mutations in COVID-19 diagnostic assays.

Raeece Naeem, Arnab Pain

assayM monitors mutations in SARS-CoV-2 diagnostic assays by analyzing global genome datasets against WHO and custom primer sequences.

bioRxiv · Dec 18, 2020 · PreprintBioinformatics

The genomic variation landscape of globally-circulating clades of SARS-CoV-2 defines a genetic barcoding scheme

Qingtian Guan, Mukhtar Sadykov, Sara Mfarrej, Sharif M. Hala, Raeece Naeem, Raushan Nugmanova, Awad Al‐Omari, Samer Salih, Abbas Saleh Al Mutair, Michael J. Carr, William W. Hall, Stefan T. Arold, Arnab Pain

The paper defines a genetic barcoding scheme using 10-nucleotide classifiers to classify SARS-CoV-2 clades from genomic data, achieving high accuracy in identifying circulating viral populations.

International Journal of Infectious Diseases · Aug 22, 2020Peer-reviewedGenomics

WhiB6 is required for the secretion-dependent regulation of ESX-1 substrates in pathogenic mycobacteria.

Abdallah M. Abdallah, E.M. Weerdenburg, Qingtian Guan, R. Ummels, S. Borggreve, S.A. Adroub, Tareq B. Malas, Raeece Naeem, Huoming Zhang, T.D. Otto, W. Bitter, A. Pain

This study shows that WhiB6 regulates ESX-1 substrate secretion in mycobacteria, independent of structural components, through transcriptional control and protein interactions.

bioRxiv · May 2, 2018 · PreprintMicrobiology