Author

Amanda Cabral da Silva

Emory UniversityORCID 0000-0003-1868-7579Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Molecular Biology· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 2 Approach:experimental assay· 2 Organism:human· 2 Approach:statistical model· 2 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Assay:DNA methylation· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Aarthi TallaiD· 1 shared Amber Lynn RittgersiD· 1 shared Ana Carolina SantanaiD· 1 shared Aniqa ShahidiD· 1 shared Chanson J. BrummeiD· 1 shared Colin Kovacs· 1 shared D Gordon· 1 shared D. T. Jones· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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1 shared paperSystems Biology

Aarthi TallaORCID

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2 papers

Recent·Most cited

Molecular BiologyJournal of VirologyPeer-reviewedJul 10, 2026

HIV superinfection reveals sequential reservoir reactivation and immune-driven rebound dynamics

F. Harrison Omondi, Aniqa Shahid, Natalie N. Kinloch…·Zabrina L. Brumme

This paper studies HIV superinfection to show how immune responses shape rebound dynamics and reservoir reactivation during treatment interruption.

DOI 10.1128/jvi.00473-26

humanDNA methylation

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Systems BiologybioRxivPreprintJan 14, 2026

Microbiome-Derived Metabolites Shape CD4⁺ T-Cell Differentiations and Immune Aging in Chronic HIV-1 Infection

Amanda Cabral da Silva, Luke Flantzer, Jaclyn Weinberg…·Souheil‐Antoine Younes

This study identifies microbiome-derived metabolites, particularly p-cresol sulfate, that alter CD4 T-cell metabolism and promote immune aging in HIV-1 infection.

DOI 10.64898/2026.01.13.699280

humanmetabolomics

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