Author

Francesco Pinotti

University of OxfordORCID 0000-0003-1953-2106Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Approach:statistical model· 2 Approach:experimental assay· 1 Approach:machine learning (classical)· 1

Frequent Co-Authors

Guillaume FourniéiD· 3 shared Damer P. BlakeiD· 2 shared Fiona M. TomleyiD· 2 shared Chaitanya G. JoshiiD· 1 shared Dirk Udo PfeifferiD· 1 shared Joerg HenningiD· 1 shared José LourençoiD· 1 shared Julien ThézéiD· 1 shared

Activity by Year

2024-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 28 mutual co-author links

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3 shared papersBioinformatics

Guillaume FourniéORCID

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3 papers

Recent·Most cited

Systems BiologyProceedings of the Royal Society B Biological SciencesPeer-reviewedAug 26, 2026

Simulation-based inference of epidemiological and phylodynamic models via Neural Posterior Estimation

Francesco Pinotti, Julien Thézé, Xavier Bailly, Guillaume Fournié

This paper applies Neural Posterior Estimation to infer parameters in epidemiological and phylodynamic models using Ebola outbreak data, showing accurate and reliable posterior estimates.

1 citation

statistical modelmachine learning (classical)

𝕏 PostBluesky

BioinformaticsPLoS Computational BiologyPeer-reviewedOct 1, 2024

Spatial distribution of poultry farms using point pattern modelling: a method to address livestock environmental impacts and disease transmission risks

Marie-Cécile Dupas, Francesco Pinotti, Chaitanya G. Joshi…·Guillaume Fournié

This paper develops a farm distribution model to predict poultry farm locations and sizes in data-scarce regions, showing that spatial clustering increases disease transmission risk.

4 citations

statistical modelbenchmarking

𝕏 PostBluesky

BioinformaticsPLoS Computational BiologyPeer-reviewedFeb 21, 2024

EPINEST, an agent-based model to simulate epidemic dynamics in large-scale poultry production and distribution networks

Francesco Pinotti, José Lourenço, Sunetra Gupta…·Guillaume Fournié

EPINEST simulates epidemic dynamics in poultry production networks to study pathogen transmission and health hazards.

5 citations

experimental assay

𝕏 PostBluesky