Zijun Zhang

Endogenous labeling empowers accurate detection of m6A from single long reads of direct RNA sequencing

This paper introduces m6Aiso, a deep learning model that accurately detects m6A sites on single RNA molecules using endogenous labeling and DRS data, revealing new insights into m6A dynamics across RNA isoforms.

An automated framework for efficiently designing deep convolutional neural networks in genomics

This paper introduces AMBER, an automated framework for designing deep CNNs in genomics, showing it outperforms non-NAS and expert-designed models in accuracy.

AMBIENT: Accelerated Convolutional Neural Network Architecture Search for Regulatory Genomics

AMBIENT is a NAS framework that creates accurate CNN architectures for genomic sequences with reduced computing costs.

Cleft lip and cleft palate (CL/P) in Esrp1 KO mice is associated with alterations in Wnt signaling and epithelial-mesenchymal crosstalk

The paper investigates the role of Esrp1 in cleft lip and palate development in mice, identifying altered Wnt signaling and epithelial-mesenchymal interactions as key factors.