Author

Asta Mannstaedt Rasmussen

Aarhus UniversityORCID 0000-0003-2035-3092Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 3 Research Focus:differential expression· 3 Research Focus:gene regulatory network inference· 3 Organism:human· 3 Assay:scRNA-seq· 2 Research Focus:software / tool· 2 Approach:statistical model· 2 Approach:Bayesian inference· 1

Frequent Co-Authors

Jakob Skou PederseniD· 3 shared Alexandre Bouchard‐CôtéiD· 1 shared Anders KroghiD· 1 shared Andreas Bjerregaard KamstrupiD· 1 shared Archana ShankariD· 1 shared Christian Kroun DamgaardiD· 1 shared Farhad ZamaniiD· 1 shared Gene Wei-Ming YeoiD· 1 shared

Activity by Year

2020-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 22 mutual co-author links

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3 shared papersBioinformatics

Jakob Skou PedersenORCID

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3 papers

Recent·Most cited

BioinformaticsbioRxivPreprintSep 10, 2026

A deep generative decoder predicts microRNA expression from bulk and single-cell mRNA profiles

Farhad Zamani, Asta Mannstaedt Rasmussen, Viktoria Schuster…·Jakob Skou Pedersen

miDGD predicts microRNA expression from bulk and single-cell mRNA profiles using a deep generative decoder, achieving high accuracy across diverse datasets and cell types.

1 citation

humanbulk RNA-seq

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BioinformaticsNucleic Acids ResearchPeer-reviewedFeb 5, 2026

bayesReact: Expression-coupled regulatory motif analysis detects microRNA activity in cancer and at the single cell level

Asta Mannstaedt Rasmussen, Alexandre Bouchard‐Côté, Jakob Skou Pedersen

bayesReact infers microRNA regulatory activities from single-cell and bulk data, showing strong correlation with expression and improved performance over existing methods.

2 citationstop 5%

mousehuman

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GenomicsGenome MedicinePeer-reviewedDec 1, 2020

Transcriptome-wide profiles of circular RNA and RNA binding protein interactions reveal effects on circular RNA biogenesis and cancer pathway expression

Trine Line Hauge Okholm, Shashank Sathe, Samuel S. Park…·Jakob Skou Pedersen

The paper identifies circRNA-RBP interactions in cancer, showing their role in circRNA biogenesis and cancer gene expression, with implications for bladder cancer prognosis.

202 citationstop 1%

humanbulk RNA-seq

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