Author

Archana Shankar

University of California San DiegoORCID 0000-0003-3499-4309Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Developmental Biology· 1 Genetics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Organism:mouse· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Assay:CRISPR screen· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1

Frequent Co-Authors

Gene Wei-Ming YeoiD· 2 shared Shashank SatheiD· 2 shared Stefan AigneriD· 2 shared Adam C. WilkinsoniD· 1 shared Aharon NachshoniD· 1 shared Alejandro Aguilera-CastrejoniD· 1 shared Andreas Bjerregaard KamstrupiD· 1 shared Asta Mannstaedt RasmusseniD· 1 shared

Activity by Year

2020-2022 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 23 mutual co-author links

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2 shared papersGenomics

Gene Wei-Ming YeoORCID

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3 papers

Recent·Most cited

GeneticsbioRxivPreprintJul 22, 2022

In vivo CRISPR screening identifies SAGA complex members as key regulators of hematopoiesis

Michael Seamus Haney, Archana Shankar, Leonid Olender…·Adam C. Wilkinson

This study uses in vivo CRISPR screening to identify SAGA complex members as key regulators of hematopoiesis, showing their loss impairs blood production and activates interferon pathways.

7 citations

mouseCRISPR screen

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GenomicsGenome MedicinePeer-reviewedDec 1, 2020

Transcriptome-wide profiles of circular RNA and RNA binding protein interactions reveal effects on circular RNA biogenesis and cancer pathway expression

Trine Line Hauge Okholm, Shashank Sathe, Samuel S. Park…·Jakob Skou Pedersen

The paper identifies circRNA-RBP interactions in cancer, showing their role in circRNA biogenesis and cancer gene expression, with implications for bladder cancer prognosis.

202 citationstop 1%

humanbulk RNA-seq

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Developmental BiologybioRxivPreprintJun 3, 2020

Context-dependent functional compensation between Ythdf m6A readers

Lior Lasman, Vladislav Krupalnik, Shay Geula…·Jacob H. Hanna

The paper investigates functional compensation among Ythdf m6A readers in mouse gametogenesis and embryonic stem cells, revealing dosage-dependent redundancy and distinct roles.

10 citations

mouseexperimental assay

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