Author

Scott A. Oakes

University of California, San FranciscoORCID 0000-0003-2099-2249Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Organism:human· 2 Research Focus:clustering· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Assay:proteomics· 1 Assay:scRNA-seq· 1 Approach:statistical model· 1

Frequent Co-Authors

Abinaya RavisankariD· 1 shared Adrienne E.D. StormoiD· 1 shared Annie OF HinikeriD· 1 shared Carson BaleniD· 1 shared Christian MirescuiD· 1 shared Ciro IaccarinoiD· 1 shared Claudia CrosioiD· 1 shared Danielle L. SwaneyiD· 1 shared

Activity by Year

2022-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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1 shared paperMolecular Biology

Abinaya RavisankarORCID

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2 papers

Recent·Most cited

GenomicsNature GeneticsPeer-reviewedJan 1, 2025

Dissecting tumor transcriptional heterogeneity from single-cell RNA-seq data by generalized binary covariance decomposition

Yusha Liu, Peter S. Carbonetto, Jason Willwerscheid…·Matthew Stephens

This paper introduces GBCD to decompose tumor transcriptional heterogeneity in scRNA-seq data, identifying a new prognostic gene expression program in pancreatic cancer.

18 citationstop 3%

humanscRNA-seq

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Molecular BiologyThe Journal of Cell BiologyPeer-reviewedJan 5, 2022

The E3 ligase TRIM1 ubiquitinates LRRK2 and controls its localization, degradation, and toxicity

Adrienne E.D. Stormo, Farbod Shavarebi, Molly FitzGibbon…·Annie OF Hiniker

This study identifies TRIM1 as an E3 ligase that ubiquitinates LRRK2, regulating its localization, degradation, and toxicity in Parkinson's Disease.

20 citations

humanproteomics

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