Author

Anne E. Clark

University of WashingtonORCID 0000-0003-2105-3032Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Approach:experimental assay· 2 Research Focus:gene regulatory network inference· 2 Approach:statistical model· 2 Research Focus:variant calling· 2 Assay:whole-genome sequencing· 2 Organism:yeast· 2 Organism:bacteria (other)· 1

Frequent Co-Authors

Aimée M. DudleyiD· 2 shared Gareth A. CromieiD· 2 shared Joshua M. AkeyiD· 2 shared Julee AshmeadiD· 2 shared Martin S. TimouriD· 2 shared Russell S. LoiD· 2 shared Trey S. Morgan· 2 shared Alexander B. Lee· 1 shared

Activity by Year

2018-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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2 shared papersGenetics

Aimée M. DudleyORCID

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3 papers

Recent·Most cited

GeneticsG3 Genes Genomes GeneticsPeer-reviewedJul 3, 2026

CYClones: A highly powered, fully genotyped, 8-parent yeast mapping population

Gareth A. Cromie, Russell S. Lo, Trey S. Morgan…·Aimée M. Dudley

CYClones is a yeast mapping population with high genetic diversity and power to detect low-heritability variants, enabling genetic dissection of complex traits.

DOI 10.1093/g3journal/jkag179

yeastwhole-genome sequencing

𝕏 PostBluesky

GeneticsbioRxivPreprintOct 27, 2025

Pervasive context-dependent effects in the genetic architecture of complex and quantitative traits revealed by a powerful multiparent mapping population in yeast

Gareth A. Cromie, Russell S. Lo, Lauren Ames…·Aimée M. Dudley

The paper uses a multiparent yeast population to identify QTL for growth rates across environments, revealing context-dependent genetic architectures and allelic heterogeneity.

DOI 10.1101/2025.10.27.683165

yeaststatistical model

𝕏 PostBluesky

BioinformaticsBMC BioinformaticsPeer-reviewedFeb 5, 2018

xenoGI: reconstructing the history of genomic island insertions in clades of closely related bacteria

Eliot Bush, Anne E. Clark, Carissa A. DeRanek…·Helen K. Wu

xenoGI identifies genomic islands in bacterial clades and maps their insertion points on phylogenetic trees to study microbial evolution.

11 citations

bacteria (other)whole-genome sequencing

𝕏 PostBluesky