Author

Ningxin Dang

First Affiliated Hospital of Xi'an Jiaotong UniversityORCID 0000-0003-2473-1142Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 3 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Research Focus:genome assembly· 2 Assay:whole-genome sequencing· 2 Organism:Arabidopsis· 1 Research Focus:clustering· 1 Research Focus:database / resource· 1 Assay:DNA methylation· 1 Approach:experimental assay· 1

Frequent Co-Authors

Kai YeiD· 4 shared Xiaofei YangiD· 4 shared Bo WangiD· 3 shared Peng JiaiD· 3 shared Shenghan GaoiD· 3 shared Songbo WangiD· 3 shared Stephen J. BushiD· 3 shared Tun XuiD· 3 shared

Activity by Year

2021-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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4 shared papersGenomics

Kai YeORCID

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4 papers

Recent·Most cited

BioinformaticsGenomics Proteomics & BioinformaticsPeer-reviewedJul 8, 2025

Deciphering complex interactions between LTR retrotransposons and three Papaver species using LTR_Stream

Tun Xu, Stephen J. Bush, Yizhuo Che…·Kai Ye

The paper develops LTR_Stream to cluster LTR-RTs in Papaver species, revealing complex interactions between retrotransposons and the host genome, including effects of allopolyploidization.

DOI 10.1093/gpbjnl/qzaf061

plant (other)DNA methylation

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GenomicsBMC GenomicsPeer-reviewedApr 10, 2024

Near telomere-to-telomere genome assemblies of two Chlorella species unveil the composition and evolution of centromeres in green algae

Bo Wang, Yanyan Jia, Ningxin Dang…·Kai Ye

10 citations

whole-genome sequencingexperimental assay

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GenomicsGenome biologyPeer-reviewedDec 4, 2023

Haplotype-resolved assemblies and variant benchmark of a Chinese Quartet

Peng Jia, Lianhua Dong, Xiaofei Yang…·Kai Ye

This study generates haplotype-resolved assemblies and a variant benchmark for a Chinese monozygotic twin quartet using advanced sequencing and computational methods.

12 citations

humanwhole-genome sequencing

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GenomicsGenomics Proteomics & BioinformaticsPeer-reviewedSep 3, 2021

High-quality Arabidopsis thaliana Genome Assembly with Nanopore and HiFi Long Reads

Bo Wang, Xiaofei Yang, Yanyan Jia…·Kai Ye

The paper presents a high-quality Arabidopsis thaliana genome assembly using long-read sequencing and Hi-C data, resolving previously missing regions and centromeres.

173 citationstop 1%

Arabidopsislong-read sequencing

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