James R. Henriksen

XTree aligns sequencing reads to large genome databases efficiently and accurately, outperforming existing tools in precision and recall.

The paper provides a standardized fieldwork handbook and open tools for microbial sampling, sequencing, and culturing at biobank scale.

The paper introduces MAGUS, a toolkit for analyzing metagenomic data from eukaryote-dominated symbiotic communities, and demonstrates its ability to resolve multiple genomes and gene catalogs from coral and hydrozoan samples.

CAMP provides a modular metagenomics analysis system that enables scalable, extensible workflows with integrated data visualization and reporting.