Author
University of CambridgeORCID 0000-0003-2720-0507Unclaimed ORCID profile · follow to get notified of new preprints
6 papers
Recent·Most cited
Neris García‐González, Roser Ferragud Ferragud, Beth Blane…·Francesc Coll
The paper improves antibiotic resistance genotyping accuracy by addressing allelic diversity and multicopy gene detection in bacterial genomes.
Kuangyi Wei, Beth Blane, Jacqueline Toussaint…·William Roberts-Sengier
BaGPipe automates bacterial GWAS workflows, improving efficiency and reproducibility by integrating preprocessing, analysis, and visualization in a scalable pipeline.
Matthew Forbes, Duncan Y. K. Ng, Róisín M. Boggan…·Ewan M. Harrison
The paper benchmarks human read removal methods in metagenomics, finding that high-sensitivity Bowtie2 with T2T-CHM13 reference improves removal while preserving microbial data.
Helen Zhang, Naomi Medina-Jaudes, Alicia Forcada‐Nadal…·Francesc Coll
The paper analyzes within-host genetic diversity of Mycobacterium tuberculosis complex strains to identify mutations associated with drug resistance and pathogenesis.
Francesc Coll, Beth Blane, Katie Bellis…·Ewan M. Harrison
The paper analyzes the mutational landscape of Staphylococcus aureus during colonization, identifying adaptive mutations in metabolic pathways and antibiotic targets.
Samuel M. Nicholls, Radoslaw Poplawski, Matthew J. Bull…·Nicholas James Loman
MAJORA enables decentralized sequencing and integration of SARS-CoV-2 genomic data and metadata across the COG-UK network, supporting rapid genomic surveillance.