Beth Blane

The paper improves antibiotic resistance genotyping accuracy by addressing allelic diversity and multicopy gene detection in bacterial genomes.

BaGPipe automates bacterial GWAS workflows, improving efficiency and reproducibility by integrating preprocessing, analysis, and visualization in a scalable pipeline.

The paper analyzes the mutational landscape of Staphylococcus aureus during colonization, identifying adaptive mutations in metabolic pathways and antibiotic targets.

The paper evaluates GWAS methods for detecting antibiotic resistance in Staphylococcus aureus genomes, finding they identify novel resistance mutations but are less accurate than literature-based approaches.

The paper compares E. coli isolates from humans and livestock to assess transmission and resistance gene sharing, finding genetic distinctions and limited shared antimicrobial resistance genes.