Francesc Coll

The paper improves antibiotic resistance genotyping accuracy by addressing allelic diversity and multicopy gene detection in bacterial genomes.

The paper analyzes within-host genetic diversity of Mycobacterium tuberculosis complex strains to identify mutations associated with drug resistance and pathogenesis.

The paper analyzes the mutational landscape of Staphylococcus aureus during colonization, identifying adaptive mutations in metabolic pathways and antibiotic targets.

rPinecone defines sub-lineages in low-variant bacterial populations using phylogenetic trees to improve outbreak and endemic disease analysis.

The paper compares E. coli isolates from humans and livestock to assess transmission and resistance gene sharing, finding genetic distinctions and limited shared antimicrobial resistance genes.

The paper analyzes Ct genomic diversity and identifies SNPs associated with ocular localization and disease severity in a West African trachoma-endemic population.