M. Estée Török

The paper improves antibiotic resistance genotyping accuracy by addressing allelic diversity and multicopy gene detection in bacterial genomes.

BaGPipe automates bacterial GWAS workflows, improving efficiency and reproducibility by integrating preprocessing, analysis, and visualization in a scalable pipeline.

This study analyzes within-host SARS-CoV-2 evolution in chronic infections, finding variable rates of evolution and evidence of subpopulation structure.

This paper reclassifies SHV β-lactamase alleles in K. pneumoniae genomes based on mutations, improving genotype-phenotype understanding and updating the Kleborate tool.

The paper evaluates GWAS methods for detecting antibiotic resistance in Staphylococcus aureus genomes, finding they identify novel resistance mutations but are less accurate than literature-based approaches.