Author

Davide Chiarugi

University of CambridgeORCID 0000-0003-2752-3189Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Cell Biology· 1 Developmental Biology· 1 Genetics· 1

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 3 Approach:statistical model· 3 Approach:experimental assay· 2 Organism:human· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Assay:ChIP-seq· 1 Organism:E. coli· 1

Frequent Co-Authors

Sherine AwadiD· 2 shared Adam J. WatkinsiD· 1 shared Albert KoulmaniD· 1 shared Alex T. Crooks· 1 shared Amy Emery· 1 shared Andrew R Bassett· 1 shared Angelo VallerianiiD· 1 shared Anne-Claire Guenantin· 1 shared

Activity by Year

2020-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 13 mutual co-author links

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2 shared papersGenetics

Sherine AwadORCID

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4 papers

Recent·Most cited

GeneticsbioRxivPreprintJun 27, 2023

Rewiring of chromatin loops in adipogenesis reveals targets for obesity and diabetes intervention

Ionel Sandovici, Borbála Mifsud, Katherine A. Kentistou…·Miguel Constância

The paper identifies chromatin loop rewiring in adipogenesis and discovers novel regulators and gene-trait associations relevant to obesity and diabetes.

1 citation

humanChIP-seq

𝕏 PostBluesky

Developmental BiologyCommunications BiologyPeer-reviewedFeb 5, 2021

Revealing grand-paternal programming of lipid metabolism using a novel computational tool

Samuel Furse, Adam J. Watkins, Nima Hojat…·Albert Koulman

The paper uses a novel computational tool to analyze lipid metabolism changes in offspring due to paternal diet, identifying tissue-specific lipid alterations linked to cardio-metabolic disease risk.

39 citationstop 1%

mousebulk RNA-seq

𝕏 PostBluesky

Cell BiologybioRxivPreprintJul 9, 2020

Unravelling the developmental roadmap towards human brown adipose tissue

Stefania Carobbio, Anne-Claire Guenantin, Myriam Bahri…·Antonio Vidal-Puig

This paper develops a chemically-defined protocol to differentiate human pluripotent stem cells into brown adipocytes, capturing developmental stages and functional properties of human brown adipose tissue.

DOI 10.1101/2020.07.09.194886

humanexperimental assay

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BioinformaticsbioRxivPreprintJan 28, 2020

A workbench for the translational control of gene expression

Angelo Valleriani, Davide Chiarugi

The paper introduces a statistical method to identify reproducible Ribo-seq profiles in E. coli, finding only 49 highly reproducible profiles across multiple datasets.

3 citations

E. coliRibo-seq

𝕏 PostBluesky