Author

Jérôme Arnoux

Centre National de la Recherche ScientifiqueORCID 0000-0003-2769-3006Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Bioinformatics· 2 Microbiology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:statistical model· 3 Organism:bacteria (other)· 2 Research Focus:gene regulatory network inference· 2 Assay:proteomics· 2 Assay:whole-genome sequencing· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cell signaling & trafficking· 1

Frequent Co-Authors

Alexandra CalteauiD· 2 shared David VallenetiD· 2 shared Jean MainguyiD· 2 shared Adelme BaziniD· 1 shared André MateusiD· 1 shared Cemal ErdemiD· 1 shared Claudine MédigueiD· 1 shared Ganeshwari DhurveiD· 1 shared

Activity by Year

2026-2026 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersBioinformatics

Alexandra CalteauORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

BioinformaticsNucleic Acids ResearchPeer-reviewedSep 21, 2026

✦ In-depth digest

PanGBank: a large-scale resource of precomputed microbial pangenomes built with PPanGGOLiN

Jean Mainguy, Téo Lemane, Adelme Bazin…·David Vallenet

Precomputed PPanGGOLiN pangenomes for over 4,600 prokaryotic species (Genome Taxonomy Database clusters), with plasticity regions and modules, downloadable via web, API and command line for projection onto new genomes.

1 citation

bacteria (other)multiple species

𝕏 PostBluesky

MicrobiologyProceedings of the National Academy of SciencesPeer-reviewedSep 16, 2026

Bacterial Stress Responses Lower mRNA-Protein Level Correlations

Sena Gizem Suer, Jérôme Arnoux, Yi Y. Lim…·Kemal Avican

This study examines mRNA-protein level correlations in bacterial pathogens under stress, finding reduced correlations and highlighting the role of post-translational modifications in stress adaptation.

1 citation

humanproteomics

𝕏 PostBluesky

BioinformaticsPLoS Computational BiologyPeer-reviewedJul 10, 2026

Panorama: a robust pangenome-based method for predicting and comparing biological systems across species

Jérôme Arnoux, Jean Mainguy, Laura Bry…·Alexandra Calteau

PANORAMA predicts and compares biological systems across species using pangenome graphs, demonstrating effectiveness on Pseudomonas and Enterobacteriaceae genomes.

1 citation

bacteria (other)whole-genome sequencing

𝕏 PostBluesky