Adelme Bazin

PanGBank: a large-scale resource of precomputed microbial pangenomes built with PPanGGOLiN

Precomputed PPanGGOLiN pangenomes for over 4,600 prokaryotic species (Genome Taxonomy Database clusters), with plasticity regions and modules, downloadable via web, API and command line for projection onto new genomes.

Trans-acting mutations reveal non-nuclear modulators of both intrinsic and extrinsic gene expression noise in a eukaryote.

The paper identifies trans-acting mutations in yeast that modulate gene expression noise in both intrinsic and extrinsic ways, revealing non-nuclear factors influencing nuclear gene expression.

panModule: detecting conserved modules in the variable regions of a pangenome graph

panModule identifies conserved modules in pangenome graphs to understand functional gene organization in microbial genomes.

panRGP: a pangenome-based method to predict genomic islands and explore their diversity

panRGP predicts genomic islands and explores their diversity using pangenome graphs across hundreds of genomes.

PPanGGOLiN: Depicting microbial diversity via a Partitioned Pangenome Graph

PPanGGOLiN partitions pangenome graphs to classify gene families into persistent, cloud, and shell partitions, revealing insights into genome dynamics and diversity.