Author

Avi Shah

Rutgers New Jersey Medical SchoolORCID 0000-0003-2822-9133Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Research Focus:cancer & tumor microenvironment· 1 Organism:E. coli· 1 Approach:experimental assay· 1 Assay:metagenomics· 1 Research Focus:software / tool· 1 Approach:statistical model· 1

Frequent Co-Authors

Aubrey R. Odom-MabeyiD· 1 shared Barry LiiD· 1 shared Boatema Ofori-AnyinamiD· 1 shared Douglas McCloskeyiD· 1 shared Eric N. ChilesiD· 1 shared Gautam Mereddy· 1 shared Jason H. YangiD· 1 shared Kiloni Quiles· 1 shared

Activity by Year

2025-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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1 shared paperBioinformatics

Aubrey R. Odom-MabeyORCID

Mutual co-authors in cluster

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintAug 29, 2025

MetaScope: A High-Resolution Framework for Species-Level 16S Metataxonomic Classification

Sean Lu, Aubrey R. Odom-Mabey, Avi Shah…·William Evan Johnson

MetaScope improves species-level classification of microbial communities using 16S rRNA data, achieving higher accuracy than existing tools like QIIME2 and DADA2.

DOI 10.1101/2025.08.29.673160

metagenomicsstatistical model

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MicrobiologyNature CommunicationsPeer-reviewedJun 9, 2025

Bioenergetic stress potentiates antimicrobial resistance and persistence

Barry Li, Shivani Srivastava, Mustafa Shaikh…·Jason H. Yang

This study shows that bioenergetic stress from antibiotic treatment enhances antimicrobial resistance and persistence in E. coli through increased ROS, repair mechanisms, and stringent response activation.

28 citationstop 1%

E. coliexperimental assay

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