Yao Li

PlantRegMoD is a multi-omics database for plant regeneration that integrates 20.54 TB of data from 147 projects across 32 species, offering tools for analysis and gene curation.

This paper introduces DeepDETAILS, a method to reconstruct cell-type-specific genomic signals from bulk data, outperforming traditional methods and providing insights into disease mechanisms.

The paper develops a dual reporter assay to measure promoter and enhancer potential, finding that they share regulatory logic and can function reciprocally.

The paper develops Quartet, a proteome reference material with built-in truths, to assess label-free proteomics reproducibility across platforms and labs.

This study uses PRO-cap to identify drug-responsive enhancers in prostate cancer, finding many not detected by ChIP-seq or ATAC-seq.

The paper compares RNA sequencing assays and introduces a tool to identify active enhancers, compiling a compendium of enhancer candidates across 120 cell types.

bioSyntax provides syntax highlighting tools for computational biology data formats to improve readability and efficiency.