Wen‐Biao Jiao

PlantRegMoD is a multi-omics database for plant regeneration that integrates 20.54 TB of data from 147 projects across 32 species, offering tools for analysis and gene curation.

Varigraph improves variant genotyping accuracy in pangenome graphs for diploid and polyploid genomes, outperforming existing methods in non-human genomes.

This study defines the mutation spectrum in Arabidopsis thaliana centromeres, showing higher point mutation rates and homology-directed repair-driven indels.

This study investigates the effects of chemically induced transposon mobilization on genomic imprinting in Arabidopsis endosperm, showing preferential targeting of maternally expressed genes and transcriptional deregulation.

This study benchmarks graph-based variant genotyping algorithms on plant genomes and introduces an ensemble pipeline, EVG, that improves genotyping accuracy and efficiency.

The paper identifies and analyzes de novo mutations and somatic gene conversions in an apple tree's sport mutation, linking them to fruit coloration changes and genomic biases.

The paper presents a chromosome-scale, haplotype-resolved genome assembly of a tetraploid potato cultivar using long reads, single-cell sequencing, and Hi-C data, revealing insights into its genetic structure and recent inbreeding history.

This paper develops a method to generate chromosome-level, haplotype-resolved genome assemblies using single-cell sequencing of gametes, demonstrating it on apricot trees.

The paper reports chromosome-level assemblies of seven Arabidopsis thaliana genomes, identifying rearrangement hotspots linked to biotic stress response genes and altered evolutionary dynamics.

SyRI identifies genomic rearrangements and local variations from whole-genome assemblies by analyzing co-linear regions and classifying structural differences.