Author

Ana Nikolić

University of CalgaryORCID 0000-0003-3145-4032Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genetic & Genomic Medicine· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Organism:human· 3 Approach:statistical model· 2 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Assay:ChIP-seq· 1 Research Focus:deconvolution· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Jennifer Ai-wen ChaniD· 3 shared Marco GalloiD· 3 shared Katrina I EllestadiD· 2 shared Michael J.G. JohnstoniD· 2 shared Aaron H. GillmoriD· 1 shared Alejandro SifrimiD· 1 shared Anna Bobyn· 1 shared Archibald EnninfuliD· 1 shared

Activity by Year

2021-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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3 shared papersGenomics

Jennifer Ai-wen ChanORCID

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3 papers

Recent·Most cited

GenomicsbioRxivPreprintMay 9, 2025

Spatial epigenomic niches underlie glioblastoma cell state plasticity

Sam Kint, Subhi Talal Younes, Shuozhen Bao…·Marco Gallo

This study identifies two epigenetically-defined spatial niches in glioblastoma that influence cell state plasticity through local and long-range molecular signals.

11 citations

humanChIP-seq

𝕏 PostBluesky

Genetic & Genomic MedicineMolecular Case StudiesPeer-reviewedJan 1, 2022

Hi-C detects genomic structural variants in peripheral blood of pediatric leukemia patients

Claire Mallard, Michael J.G. Johnston, Anna Bobyn…·Marco Gallo

The paper demonstrates that Hi-C can detect structural variants, including translocations, in peripheral blood samples of pediatric B-ALL patients, offering a non-invasive alternative to bone marrow biopsies.

23 citations

humanHi-C

𝕏 PostBluesky

BioinformaticsScience AdvancesPeer-reviewedOct 13, 2021

Copy-scAT: Deconvoluting single-cell chromatin accessibility of genetic subclones in cancer

Ana Nikolić, Divya Singhal, Katrina I Ellestad…·Marco Gallo

Copy-scAT deconvolutes single-cell chromatin accessibility to infer genetic subclones in cancer, revealing how genetics influence chromatin profiles and subclonal phenotypes.

60 citations

humanscATAC-seq

𝕏 PostBluesky