Author

Federico C. F. Calboli

Natural Resources Institute FinlandORCID 0000-0003-3176-9085Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Ecology· 1 Evolutionary Biology· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Approach:experimental assay· 2 Approach:statistical model· 2 Research Focus:batch correction / integration· 1 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Research Focus:cell signaling & trafficking· 1 Research Focus:cell type annotation· 1

Frequent Co-Authors

FILIP A. M. VOLCKAERTiD· 2 shared Joost A. M. RaeymaekersiD· 2 shared Alex C. SoupiriD· 1 shared Alexander J. NederbragtiD· 1 shared Andrew P. HendryiD· 1 shared Anni S. Halkola· 1 shared Ari LöytynojaiD· 1 shared Aruna M. ShankregowdaiD· 1 shared

Activity by Year

2019-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 12 mutual co-author links

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2 shared papersEvolutionary Biology

FILIP A. M. VOLCKAERTORCID

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Evolutionary BiologybioRxivPreprintAug 1, 2025

Fish Show Genetic Evolutionary Responses to River Regulation

Xiatong Cai, Io S. Deflem, Colin David Rennie…·Joost A. M. Raeymaekers

The paper investigates genetic evolutionary responses of fish to river regulation by analyzing genetic divergence and gene function in three-spined stickleback populations.

1 citation

statistical modelhost-pathogen & immune response

𝕏 PostBluesky

EcologybioRxivPreprintApr 29, 2024

Spleen gene expression is associated with mercury content in three-spined stickleback populations

Brijesh Singh Yadav, Fabien Claude Lamaze, Aruna M. Shankregowda…·Joost A. M. Raeymaekers

The paper examines transcriptomic changes in the spleen of three-spined stickleback populations with varying mercury levels, identifying differentially expressed genes linked to neurological, immunological, and splicing processes.

DOI 10.1101/2024.04.29.591498

bulk RNA-seqexperimental assay

𝕏 PostBluesky

BioinformaticsScientific DataPeer-reviewedJul 5, 2023

curatedPCaData: Integration of clinical, genomic, and signature features in a curated and harmonized prostate cancer data resource

Teemu D. Laajala, Varsha Sreekanth, Alex C. Soupir…·James C. Costello

curatedPCaData harmonizes prostate cancer datasets to enable meta-analysis and clinical insights across multiple cohorts.

4 citations

humanbulk RNA-seq

𝕏 PostBluesky

GenomicsGenome Biology and EvolutionPeer-reviewedOct 30, 2019

Genome sequencing of the nine-spined stickleback (Pungitius pungitius) provides insights into chromosome evolution.

Srinidhi Varadharajan, Pasi M. A. Rastas, Ari Löytynoja…·Juha Merilä

The paper presents a high-quality chromosome-level genome assembly of the nine-spined stickleback, revealing evolutionary insights and chromosomal rearrangements compared to the three-spined stickleback.

70 citationstop 3%

whole-genome sequencingexperimental assay

𝕏 PostBluesky