Author

Danielle F. Miyagishima

Yale UniversityORCID 0000-0003-3257-5469Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Cancer Biology· 1 Physiology· 1

Signature Assays, Organisms & Methods

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Organism:human· 3 Research Focus:cell type annotation· 2 Research Focus:cell-cell communication· 2 Approach:deep learning· 2 Research Focus:differential expression· 2 Assay:spatial transcriptomics· 2 Research Focus:benchmarking· 1 Approach:experimental assay· 1

Frequent Co-Authors

Murat GüneliD· 3 shared Tanyeri BarakiD· 3 shared Batur GültekiniD· 2 shared Declan McGuoneiD· 2 shared Jennifer A. MoliternoiD· 2 shared Kanat YalciniD· 2 shared Ketu Mishra-GoruriD· 2 shared Phan Q. DuyiD· 2 shared

Activity by Year

2022-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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3 shared papersCancer Biology

Murat GünelORCID

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3 papers

Recent·Most cited

Cancer BiologybioRxivPreprintJun 17, 2026

Multicellular Spatial Programs Define the Histopathological Architecture of Meningioma

Danielle F. Miyagishima, Arman Afrasiyabi, Declan McGuone…·Murat Günel

This study identifies multicellular spatial molecular programs in meningiomas using multi-omic data and develops a model to infer these programs from histopathology.

DOI 10.64898/2026.06.16.732172

humanscRNA-seq

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PhysiologybioRxivPreprintFeb 17, 2025

Non-invasive approach for endoluminal biopsy coupled with single-cell proteomics allows for immune characterization of intracranial aneurysms

Joseph Paul Antonios, Batur Gültekin, Brianna Carusillo Theriault…·Murat Günel

This study uses endoluminal biopsy and single-cell proteomics to analyze immune profiles in intracranial aneurysms, identifying immune signatures linked to aneurysm stability and rupture.

DOI 10.1101/2025.02.17.638658

humanproteomics

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BioinformaticsbioRxivPreprintAug 24, 2022

spARC Recovers Human Glioma Spatial SignalingNetworks with Graph Filtering

Manik Razdan Kuchroo, Danielle F. Miyagishima, Holly R. Steach…·Smita Krishnaswamy

The paper introduces spARC, a method to recover spatial signaling networks in gliomas, revealing an Osteopontin-CD44 interaction enriched in grade IV astrocytomas.

6 citations

humanspatial transcriptomics

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