Julia Patricia Schessner

ProteoBench provides a centralized platform for comparing proteomics data analysis workflows, enabling benchmarking and community collaboration.

The paper uses Dynamic Organellar Maps to study protein localization changes in yeast during ER stress, revealing widespread relocalization and new insights into ER stress responses.

AlphaPept is an open-source framework for efficient processing of large MS-based proteomics datasets, achieving significant speed improvements using Python and machine learning.

The paper introduces directLFQ, a label-free quantification method that scales linearly with sample numbers, enabling rapid analysis of large proteomics datasets.